Package: treats 1.0.7

treats: Trees and Traits Simulations

A modular package for simulating phylogenetic trees and species traits jointly. Trees can be simulated using modular birth-death parameters (e.g. changing starting parameters or algorithm rules). Traits can be simulated in any way designed by the user. The growth of the tree and the traits can influence each other through modifiers objects providing rules for affecting each other. Finally, events can be created to modify both the tree and the traits under specific conditions.

Authors:Thomas Guillerme [aut, cre, cph]

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treats.pdf |treats.html✨
treats/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/tguillerme/treats/issues

On CRAN:

44 exports 3 stars 2.23 score 113 dependencies 19 scripts 187 downloads

Last updated 19 days agofrom:02508ef860. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:age.conditionbd.params.updateBM.processbranch.lengthbranch.length.traitcrude.bd.estdiscrete.processdispRitreatsdrop.fossilsdrop.livingsdrop.singlesdrop.thingsdrop.tip.treatsevents.conditionevents.modificationfounding.eventkeep.tip.treatslink.traitsmake.bd.paramsmake.eventsmake.modifiersmake.traitsmake.treatsmap.traitsmodifiersmodifiers.updatemulti.peak.processno.processOU.processparent.traitsplot.treatsprint.treatsrandom.extinctionrepulsion.processselectionspeciationspeciation.traittaxa.conditiontrait.conditiontrait.extinctiontrait.processtraits.updatetransition.matrixtreats

Dependencies:abindade4apebase64encbslibcachemcastorCladdisclicliprclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11DEoptimdeSolvedigestdispRitydoParallelellipseevaluateexpmfansifarverfastmapfastmatchfontawesomeforeachfsfuturefuture.applygeigergenericsgeometrygeoscaleGETggplot2globalsgluegridExtragtablehighrhtmltoolshtmlwidgetsigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelifecyclelinproglistenvlpSolvemagicmagrittrmapsMASSMatrixmemoisemgcvmimemnormtmunsellmvtnormnaturalsortncbitnlmenumDerivoptimParallelparallellypbapplypermutephangornphyclustphylolmphytoolspillarpixmappkgconfigquadprogR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressrglrlangrmarkdownRSpectrasassscalesscatterplot3dspstrapsubplextibbletinytexutf8vctrsveganviridisLitewithrxfunyamlzoo